New Way to Look at Dawn of Life: Focus Shifts from 'Hardware' to 'Software'

Techne

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New Way to Look at Dawn of Life: Focus Shifts from 'Hardware' to 'Software'

Dec. 12, 2012 — One of the great mysteries of life is how it began. What physical process transformed a nonliving mix of chemicals into something as complex as a living cell?

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Assorted diatoms. One of the great mysteries of life is how it began. What physical process transformed a nonliving mix of chemicals into something as complex as a living cell? (Credit: NOAA)

For more than a century, scientists have struggled to reconstruct the key first steps on the road to life. Until recently, their focus has been trained on how the simple building blocks of life might have been synthesized on the early Earth, or perhaps in space. But because it happened so long ago, all chemical traces have long been obliterated, leaving plenty of scope for speculation and disagreement.

Now, a novel approach to the question of life's origin, proposed by two Arizona State University scientists, attempts to dramatically redefine the problem. The researchers -- Paul Davies, an ASU Regents' Professor and director of the Beyond Center for Fundamental Concepts in Science, and Sara Walker, a NASA post-doctoral fellow at the Beyond Center -- published their theory in the Dec. 12 issue of the Royal Society journal Interface.

In a nutshell, the authors shift attention from the "hardware" -- the chemical basis of life -- to the "software" -- its information content. To use a computer analogy, chemistry explains the material substance of the machine, but it won't function without a program and data. Davies and Walker suggest that the crucial distinction between non-life and life is the way that living organisms manage the information flowing through the system.

"When we describe biological processes we typically use informational narratives -- cells send out signals, developmental programs are run, coded instructions are read, genomic data are transmitted between generations and so forth," Walker said. "So identifying life's origin in the way information is processed and managed can open up new avenues for research."

"We propose that the transition from non-life to life is unique and definable," added Davies. "We suggest that life may be characterized by its distinctive and active use of information, thus providing a roadmap to identify rigorous criteria for the emergence of life. This is in sharp contrast to a century of thought in which the transition to life has been cast as a problem of chemistry, with the goal of identifying a plausible reaction pathway from chemical mixtures to a living entity."

Focusing on informational development helps move away from some of the inherent disadvantages of trying to pin down the beginnings of chemical life.

"Chemical based approaches," Walker said, "have stalled at a very early stage of chemical complexity -- very far from anything we would consider 'alive.' More seriously they suffer from conceptual shortcomings in that they fail to distinguish between chemistry and biology."

"To a physicist or chemist life seems like 'magic matter,'" Davies explained. "It behaves in extraordinary ways that are unmatched in any other complex physical or chemical system. Such lifelike properties include autonomy, adaptability and goal-oriented behavior -- the ability to harness chemical reactions to enact a pre-programmed agenda, rather than being a slave to those reactions."

"We believe the transition in the informational architecture of chemical networks is akin to a phase transition in physics, and we place special emphasis on the top-down information flow in which the system as a whole gains causal purchase over its components," Davies added. "This approach will reveal how the logical organization of biological replicators differs crucially from trivial replication associated with crystals (non-life). By addressing the causal role of information directly, many of the baffling qualities of life are explained."

The authors expect that, by re-shaping the conceptual landscape in this fundamental way, not just the origin of life, but other major transitions will be explained, for example, the leap from single cells to multi-cellularity.
In addition to being a post-doctoral Fellow at the Beyond Center, Walker is affiliated with the NASA Astrobiology Institute in Mountain View, Calif., and the Blue Marble Space Institute, Seattle.

Journal Reference:
Sara Imari Walker, Paul C. W. Davies. The Algorithmic Origins of Life. Interface, (in press) December 12, 2012 [link]

The Algorithmic Origins of Life
Although it has been notoriously difficult to pin down precisely what it is that makes life so distinctive and remarkable, there is general agreement that its informational aspect is one key property, perhaps the key property. The unique informational narrative of living systems suggests that life may be characterized by context-dependent causal influences, and in particular, that top-down (or downward) causation -- where higher-levels influence and constrain the dynamics of lower-levels in organizational hierarchies -- may be a major contributor to the hierarchal structure of living systems. Here we propose that the origin of life may correspond to a physical transition associated with a shift in causal structure, where information gains direct, and context-dependent causal efficacy over the matter it is instantiated in. Such a transition may be akin to more traditional physical transitions (e.g. thermodynamic phase transitions), with the crucial distinction that determining which phase (non-life or life) a given system is in requires dynamical information and therefore can only be inferred by identifying causal architecture. We discuss some potential novel research directions based on this hypothesis, including potential measures of such a transition that may be amenable to laboratory study, and how the proposed mechanism corresponds to the onset of the unique mode of (algorithmic) information processing characteristic of living systems.
Interesting research.
 

be.plato

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One of the great mysteries of life is how it began. What physical process transformed a nonliving mix of chemicals into something as complex as a living cell?

Only one Act did it.
 

porchrat

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Techne this all seems truly interesting but I find myself lost.

I don't see how any of this changes the need for a set of chemical reactions, favourable in some or other environment, the details of which we are still unsure of, that would lead to some early form of life.

It just seems as though they shift the definition of life to something slightly further up the chain by introducing the concept of information processing. They just start looking at the problem from a different point.

Is there something I am missing on a conceptual level here or is that all there is to it?
 

Techne

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Techne this all seems truly interesting but I find myself lost.

I don't see how any of this changes the need for a set of chemical reactions, favourable in some or other environment, the details of which we are still unsure of, that would lead to some early form of life.
I don't think these guys argue that it "changes the need for a set of chemical reactions" for life as we know it to exist.

It just seems as though they shift the definition of life to something slightly further up the chain by introducing the concept of information processing. They just start looking at the problem from a different point.

Is there something I am missing on a conceptual level here or is that all there is to it?
I think these guys are looking at the importance of top-down causation in addition to bottom-up causation. Look on page 8 of the original article for an explanation. E,g,:
. For example, mechanical stresses on a cell may affect gene expression. Mechanotransduction, electrical transduction and chemical signal transduction – all well-studied biological processes – constitute examples of what philosophers term “top-down causation”, where the system as a whole exerts causal control over a subsystem (e.g. a gene) via a set of time-dependent constraints [3, 52, 20]. The onset of top-down information flow, perhaps in a manner akin to a phase transition, may serve as a more precise definition of life’s origin than the “separation of powers” discussed in the previous section. The origin of life may thus be identified when information gains top-down causal efficacy over the matter that instantiates it. Top-down causation has an extensive literature so will not be reviewed here (see i.e. [7, 8, 58, 3, 26, 20, 25, 27]).
 

porchrat

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I don't think these guys argue that it "changes the need for a set of chemical reactions" for life as we know it to exist.


I think these guys are looking at the importance of top-down causation in addition to bottom-up causation. Look on page 8 of the original article for an explanation. E,g,:
OK so it seems my initial take on it was correct then.

They propose a new perspective. As your quoted sections say a top-down approach in addition to the bottom-up approach?

Strange that this never occurred to anyone before.
 

Techne

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OK so it seems my initial take on it was correct then.

They propose a new perspective. As your quoted sections say a top-down approach in addition to the bottom-up approach?

Strange that this never occurred to anyone before.
Indeed.
 

Bobbin

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I have no idea why I attempted this exercise below as I have no clue about any of this :D but hey this is how I would visualize life beginning on Earth from my layman perspective:

- Some form of energy reaction takes place on a chemical level between an energy source and an element of some kind
- At some point the energy reaction reaches a sustained repetitive process of ongoing generation of various chemical components
- Some of the resulting molecules would either almost immediately or over time have the capacity to absorb more energy for further sustained chemical reaction via its immediate surroundings as opposed to the original energy source
- Prolonged exposure to this kind of environment will eventually yield molecules/cells more efficient by way of specializing in absorbing one another or elements of their environment and growing in complexity
- Splitting of the internal chemical components of these more complex cells would yield an identical layer of two cells by natural attraction of other chemical elements, also resulting in the split of the entire body of the cell
- Sustained replication and energy absorption continues until it begins to extract exceedingly complex mechanics through chemical and energy absorption via its environment

So self replication on a basic level will begin as one of these more complex molecules/cells becomes exceeding efficient at duplicating its chemical nature. It is at some point that the chemical split becomes more of a "data transfer" where the internal components have begun to form a rigid structure optimized for replication as this occurrence happens more frequently than other "lesser" companion molecules/cells due it it's own efficiency compared to that of those other "lesser" companion cells.
 

Techne

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Hi ya Bobbin,

One way to try and understand "top-down causation" (to me it is strikingly similar to the Aristotelian idea of "formal cause") is to look at the example of a free neutron (a complete substance) and a neutron as part of hydrogen (in this case, a neutron is an attribute of hydrogen and hydrogen is a complete substance).

A free neutron (and thus a complete substance) has a half-life of about 881.5±1.5s (see wiki).
However, a bound neutron (i.e. an attribute of some substance e.g. hydrogen) has a half-life that depends on the stability of the substance it "inheres" or "is part of". For example, neutrons are pretty stable in hydrogen and deuterium (a hydrogen isotope) However, tritium (another isotope of hydrogen) has a half-live of about 12 years, meaning the neutrons decay into protons at rates depending on the substance it inheres or is part of.

Therefore, the argument can be made that a substance has a top-down cause on its parts in a manner that changes their properties. E.g. a free neutron has different properties than when it is part of a substance, and its properties depends on the substance it inheres and therefore the kind of top-down causation a substance has on it. It also follows that a free neutron is fundamentally different to that of bound neutrons and it depends on the top-down causation of the kind of substance it is part of.

Same thing can be said about life. While your scenario may be plausible for the origin of life, it takes nothing away from the fact that the top-down causation of life is fundamentally different to that of substances that are not life or not alive or not living.
 
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