Gut microbes keep species apart

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Another evolutionary mechanism.

Intestinal flora dooms hybrid offspring of cross-breeding wasps.
Ed Yong
18 July 2013

Mountain ranges and rivers can act as physical barriers that separate closely related species and keep them from cross-breeding. But the trillions of microbes in an animal’s guts could have the same role.

Robert Brucker and Seth Bordenstein, biologists at Vanderbilt University in Nashville, Tennessee, have found that the gut bacteria of two recently diverged wasp species act as a living barrier that stops their evolutionary paths from reuniting. The wasps have subtly different collections of gut microbes, and when they cross-breed, the hybrids develop a distorted microbiome that causes their untimely deaths.

“This is the most convincing evidence that the microbiome evolves with hosts over long time periods and might affect the speciation process,” says Bordenstein. The results are published in Science1.

Jürgen Gadau, an evolutionary biologist at Arizona State University in Tempe, says that the microbiome is just one of many factors that drive the origin of species. “The important point is that microbes can change very rapidly,” he says — so they could very quickly enforce the separation of nascent species.

It's what's on the inside that counts

“The gut microbiome has been intensely studied from a health perspective, but very little has been done on its evolution,” says Bordenstein. Other scientists have shown that the microbiomes of different species diverge in a way that mirrors their hosts' evolutionary relationships2, but it was unclear whether the bacteria were simply reacting to the hosts’ changing diets or were truly co-evolving with them.

Brucker and Bordenstein addressed this by studying Nasonia giraulti and Nasonia vitripennis, two parasitic wasps that deposit their eggs in the larvae of other insects. The two species diverged one million years ago, and can still raise their young on the same hosts. When they breed, around 90% of male offspring die as larvae.

The researchers found that the wasps' gut microbes included a bacterium in the genus Providencia, and another species called Proteus mirabilis. The parental species had more Providencia, but P. mirabilis dominated in the hybrids. This suggests that interbreeding brings about harmful changes to the gut flora, so that the insects' microbiota helps to keep the two species separate.

To confirm that the different flora was responsible for the males' demise, the team tried ‘curing’ the hybrid wasps of their gut microbes. They devised a way of rearing Nasonia eggs in a nutrient broth rather than an insect host, and killed the microbes in the wasps' developing guts using antibiotics. This rescued many of the doomed hybrids: half survived to pupation. But when the team added Providencia and P. mirabilis to the rearing liquid of initially germ-free wasps, most of the hybrid larvae died as usual.

Genes and germs

“This is an important and potentially groundbreaking study,” says Jack Werren, an evolutionary geneticist at the University of Rochester in New York. “It reveals that problems in hybrids can be due not just to their genetic make-up, but to interactions between their genes and associated microbes.” The next step, he says, is to “determine which genes are involved in regulating which bacteria, and how this is disrupted in hybrids”.

Brucker and Bordenstein found that 40% of the wasps’ immune genes were at least twice as active in the normal hybrids as in the germ-free ones. They suspect that genetic incompatibilities between the parent species disrupt the hybrids’ immune systems and weaken their ability to control their gut microbes. The insects end up with an unusual microbiome, which kills them. “The closest analogy we have is that it’s like an autoimmune disorder,” says Brucker.

In this way, the insects' microbiota helps the two species to separate and, in time, to differentiate ever more, even if they share the same geographical range. Likewise, an earlier study3 showed that gut microbes can steer the sexual preferences of flies towards individuals with similar microbiomes, which might also help to accentuate the split between species.

“We’d never say that the microbiome is the key element in all speciation,” says Brucker. Rather, he feels that biologists must consider both the genome and the microbiome to understand animal evolution. “Our classic understanding of speciation is still true but we’re just adding a new arm to that,” he says.


http://www.nature.com/news/gut-microbes-keep-species-apart-1.13408
 
It's not just inside, it's also on top! :p

Bacteria can drive the evolution of new species
Joseph Milton, 1 November 2010

Symbiotic organisms influence fruitfly mate choice.

Bacteria that live on the fruitfly Drosophila melanogaster can affect their host's choice of mate by altering the fly's pheromones, a new study suggests. That change in mate choice could in turn lead to the evolution of new fly species — suggesting that bacteria can indirectly change the species of their hosts.

When microbiologist Gil Sharon, at Tel-Aviv University in Israel, and his colleagues raised some fruitflies on molasses and others on starch, they expected — on the basis of previous studies — that the flies would mate preferentially with partners raised on the same diet, and the flies did. However, why the flies showed a preference for mates that shared the same diet was unknown.

Eugene Rosenberg, also a microbiologist at Tel-Aviv University and part of the team that worked on the study, suspected that a change in diet acts on symbiotic bacteria living on the flies, rather than directly on the flies themselves. "This adds weight to the idea that bacteria have an important role in the evolution of animals and plants," he says.

The findings, published this week in Proceedings of the National Academy of Sciences1, are consistent with 'hologenome' theory — first proposed by Rosenberg and his wife, fellow evolutionary biologist Ilana Zilber-Rosenberg, in 20082. The theory suggests that natural selection, which drives evolution, acts on a host and its symbiotic partners as a single unit rather than on each species in isolation.

The fruitflies developed a mating preference just a single generation after they were introduced to a new diet. The effect was seen to last for 37 generations. "It's a very rapid and long lasting effect," says Mike Ritchie, an evolutionary biologist at the University of St Andrews, UK, who also works on Drosophila, "so it could influence speciation."
Bacterial control

To confirm that it was the bacteria that were influencing fly mating behaviour — and not simply the flies themselves changing their behaviour in response to their diet — the researchers treated the flies with antibiotics, wiping out the bacteria that live on them. They then tested the flies again and found that they mated randomly — rather than showing a preference for same-diet partners — indicating that the bacteria were influencing mate choice.

"If you change the diet, then some of the bacteria in the gut will multiply more than others and this will change the hologenome, the sum of the genes," says Rosenberg.

By looking at genetic fingerprints, the researchers identified the bacterial species responsible, Lactobacillus plantarum. In flies fed on a diet of starch L. plantarum made up 26% of their symbiotic bacteria, compared with just 3% on molasses-fed flies. To confirm that L. plantarum was responsible, antibiotic-treated flies were re-infected with the bacterium, and seen to return to preferential mating behaviour.

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The team then examined fly pheromones — chemicals that affect the behaviour of other members of the same species. Although Rosenberg says that the results are not yet conclusive, the researchers found that the starch-fed flies had altered levels of some pheromones known to be involved in mating behaviour. "There's a hint from analytical data that they are altering the sexual pheromones, but this really has to be looked at more closely," he says.

Ritchie says the work could open up whole new avenues of study. "We know that plant-eating flies show very high speciation rates," he says. "This could be a general mechanism."

Rosenberg says the next step is to investigate whether this mechanism is occurring in natural fruitfly populations, and to pin down how the bacteria are passed from one generation to the next.

http://www.nature.com/news/2010/101101/full/news.2010.575.html
 
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