They're being shut down because of the scare. It remains to be seen whether it's permanent or just been done to appease the strong anti-nuclear lobby there. I'm sure Germany has strict emissions targets for the future that will probably necessitate those nuclear power plants are kept running for a while still
From what I've read, it was because they were set to be decommissioned ages ago. There were a group of people protesting for the plants closure but that swelled to immense numbers when news from Japan reached the world.
Nuclear energy is very safe. I'm not denying things can go wrong, but the chances are minuscule. The pros far outweighs the cons, what cheaper, cleaner alternatives can countries such as Japan, France, Germany and Korea afford without quadrupling energy prices unnecessarily?