Thank guys, I thought as much that these guys were taking me for a ride.
So the company (let's call them Company A) had good reviews and their quote was extremely detailed on the work they were going to do right down to the materials. They also took detailed pics of the site indicating which areas they were going to touch.
During the week I find out that Company A sub-contracted the work out to another contractor (Company B) without telling me upfront that they were going to do this. I then found out that Company B further sub-contracted out

. Company A backed up these other contractors and said they would take ownership if there are any issues.
Aside from this "cement flashing" issue there were a number of other problems I had during the week with these sub-contractors trying to cut corners but this was the straw that broke the camel's back.
Told the guys to pack up and leave and called Company A to express my disappointment.
Someone from Company A was on site this afternoon to inspect the work and sent me a follow up via e-mail acknowledging the issues. They will send out their guys to clean up and complete the rest of the work properly.
They're going to do some waterproofing in my garage (not in the quote) as a courtesy.
Really hope it's smooth sailing from here.